Introduction Illumina have recently released an updated version of their downstream analysis software CASAVA. This is the analysis pipeline which runs after the sequencer has processed the raw data down to base call files and provides a variety of functionalities from creating usable base calls to alignment and variant calling. Casava 1.8 makes some major…
Importing RNA-Seq data into SeqMonk
Introduction Mapped RNA-Seq data coming from eukaryotes is probably the most complicated data type to import into SeqMonk due to it’s relative complexity and the abundance of options with which you are presented. Depending on exactly what sort of information you want to know about your data different data import options will be useful, so…